If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ), 'gf_id' => 'HOM05D000614', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000614' ), 'data_identifier' => 'HOM05D000614', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000614', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p29700' => 'bna', 'A02p33160' => 'bna', 'A02p35130' => 'bna', 'A04p10100' => 'bna', 'A04p13950' => 'bna', 'A04p13960' => 'bna', 'A04p13970' => 'bna', 'A04p13980' => 'bna', 'A04p13990' => 'bna', 'A04p19200' => 'bna', 'A04p19320' => 'bna', 'A04p19330' => 'bna', 'A04p19340' => 'bna', 'A04p19350' => 'bna', 'A04p19360' => 'bna', 'A06p10310' => 'bna', 'A06p22760' => 'bna', 'A06p22770' => 'bna', 'A06p22780' => 'bna', 'A06p22790' => 'bna', 'A06p22800' => 'bna', 'A06p22810' => 'bna', 'A06p22820' => 'bna', 'A06p22830' => 'bna', 'A06p22840' => 'bna', 'A06p41470' => 'bna', 'A06p43400' => 'bna', 'A07p29360' => 'bna', 'A07p40310' => 'bna', 'A08p04410' => 'bna', 'A08p06200' => 'bna', 'A08p20610' => 'bna', 'A08p24580' => 'bna', 'A08p27640' => 'bna', 'A09p24040' => 'bna', 'A09p40350' => 'bna', 'A09p62270' => 'bna', 'A10p09470' => 'bna', 'A10p17760' => 'bna', 'Aa31LG1G12550' => 'aar', 'Aa31LG1G720' => 'aar', 'Aa31LG2G5480' => 'aar', 'Aa31LG4G4770' => 'aar', 'Aa31LG7G8210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4841' => 'aag', 'Actinidia03735' => 'ach', 'Actinidia04033' => 'ach', 'Actinidia04034' => 'ach', 'Actinidia04909' => 'ach', 'Actinidia19049' => 'ach', 'Actinidia19865' => 'ach', 'Actinidia31200' => 'ach', 'Actinidia34988' => 'ach', 'Actinidia36195' => 'ach', 'Ah.02g131230' => 'amhyb', 'Ah.03g135250' => 'amhyb', 'Ah.03g147450' => 'amhyb', 'Ah.11g048580' => 'amhyb', 'AL1G26210' => 'aly', 'AL1G38620' => 'aly', 'AL2G34390' => 'aly', 'AL5G12430' => 'aly', 'AL5G16260' => 'aly', 'AL7G49060' => 'aly', 'AL8G37160' => 'aly', 'Aqoxy3G00695' => 'aox', 'Aqoxy3G03337' => 'aox', 'Aqoxy5G03401' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G17QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.311ECE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HV08P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.77T7YG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZAQ4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9G38U' => 'arhy', 'AT1G14330' => 'ath', 'AT1G26930' => 'ath', 'AT1G74510' => 'ath', 'AT2G02870' => 'ath', 'AT3G27150' => 'ath', 'AT5G40680' => 'ath', 'AT5G60570' => 'ath', 'ATR0115G024' => 'atr', 'ATR0561G131' => 'atr', 'ATR0561G150' => 'atr', 'ATR0561G165' => 'atr', 'ATR0561G190' => 'atr', 'ATR0561G203' => 'atr', 'ATR0561G236' => 'atr', 'ATR0564G004' => 'atr', 'ATR0602G012' => 'atr', 'Atru.chr11.1826' => 'acertr', 'Atru.chr3.3641' => 'acertr', 'Atru.chr6.2550' => 'acertr', 'Atru.chr6.2558' => 'acertr', 'Atru.chr9.2285' => 'acertr', 'AUR62003496' => 'cqu', 'AUR62005752' => 'cqu', 'AUR62008382' => 'cqu', 'AUR62017816' => 'cqu', 'AUR62021716' => 'cqu', 'AUR62028808' => 'cqu', 'BcaB01g02936' => 'bca', 'BcaB01g02937' => 'bca', 'BcaB01g02938' => 'bca', 'BcaB01g02939' => 'bca', 'BcaB01g02940' => 'bca', 'BcaB01g02941' => 'bca', 'BcaB02g06956' => 'bca', 'BcaB02g10656' => 'bca', 'BcaB03g12016' => 'bca', 'BcaB03g12205' => 'bca', 'BcaB04g18726' => 'bca', 'BcaB04g18727' => 'bca', 'BcaB04g18728' => 'bca', 'BcaB04g18729' => 'bca', 'BcaB04g18730' => 'bca', 'BcaB06g28027' => 'bca', 'BcaB07g30186' => 'bca', 'BcaB07g30690' => 'bca', 'BcaB08g34386' => 'bca', 'BcaB08g34812' => 'bca', 'BcaB08g34813' => 'bca', 'BcaB08g36352' => 'bca', 'BcaC01g00177' => 'bca', 'BcaC01g00178' => 'bca', 'BcaC02g08385' => 'bca', 'BcaC02g08386' => 'bca', 'BcaC02g08387' => 'bca', 'BcaC02g08388' => 'bca', 'BcaC02g08389' => 'bca', 'BcaC02g08390' => 'bca', 'BcaC02g08391' => 'bca', 'BcaC02g08392' => 'bca', 'BcaC02g08991' => 'bca', 'BcaC02g08992' => 'bca', 'BcaC02g08993' => 'bca', 'BcaC03g17174' => 'bca', 'BcaC03g17427' => 'bca', 'BcaC04g19714' => 'bca', 'BcaC04g21512' => 'bca', 'BcaC05g25329' => 'bca', 'BcaC05g25330' => 'bca', 'BcaC05g26369' => 'bca', 'BcaC06g31018' => 'bca', 'BcaC06g33856' => 'bca', 'BcaC06g33859' => 'bca', 'BcaC06g34031' => 'bca', 'BcaC06g36582' => 'bca', 'BcaC06g36583' => 'bca', 'BcaC07g39257' => 'bca', 'BcaC07g41579' => 'bca', 'BcaC08g46882' => 'bca', 'BcaC08g46883' => 'bca', 'BcaC08g46989' => 'bca', 'BcaNung06289' => 'bca', 'BcaNung06290' => 'bca', 'BcaNung06291' => 'bca', 'BcaNung06292' => 'bca', 'BolC2t11189H' => 'bol', 'BolC2t11445H' => 'bol', 'BolC3t19909H' => 'bol', 'BolC3t19911H' => 'bol', 'BolC3t19913H' => 'bol', 'BolC3t19914H' => 'bol', 'BolC4t26378H' => 'bol', 'BolC4t26379H' => 'bol', 'BolC4t26380H' => 'bol', 'BolC4t26381H' => 'bol', 'BolC4t26390H' => 'bol', 'BolC4t26391H' => 'bol', 'BolC4t26392H' => 'bol', 'BolC4t26394H' => 'bol', 'BolC4t27022H' => 'bol', 'BolC4t27023H' => 'bol', 'BolC4t27024H' => 'bol', 'BolC4t27025H' => 'bol', 'BolC4t27026H' => 'bol', 'BolC4t27027H' => 'bol', 'BolC4t27028H' => 'bol', 'BolC4t27029H' => 'bol', 'BolC5t29964H' => 'bol', 'BolC5t31139H' => 'bol', 'BolC6t38439H' => 'bol', 'BolC6t39900H' => 'bol', 'BolC7t40668H' => 'bol', 'BolC7t43865H' => 'bol', 'BolC7t44134H' => 'bol', 'BolC8t49905H' => 'bol', 'BolC8t52133H' => 'bol', 'BolC9t55952H' => 'bol', 'BolC9t58196H' => 'bol', 'BraA02t06981Z' => 'bra', 'BraA02t07994Z' => 'bra', 'BraA02t08339Z' => 'bra', 'BraA02t08518Z' => 'bra', 'BraA04t16672Z' => 'bra', 'BraA04t17059Z' => 'bra', 'BraA04t17060Z' => 'bra', 'BraA04t17061Z' => 'bra', 'BraA04t17521Z' => 'bra', 'BraA04t17530Z' => 'bra', 'BraA04t17531Z' => 'bra', 'BraA04t17532Z' => 'bra', 'BraA06t24213Z' => 'bra', 'BraA06t25357Z' => 'bra', 'BraA06t25358Z' => 'bra', 'BraA06t25359Z' => 'bra', 'BraA06t25360Z' => 'bra', 'BraA06t25361Z' => 'bra', 'BraA06t25362Z' => 'bra', 'BraA06t25363Z' => 'bra', 'BraA06t25364Z' => 'bra', 'BraA06t25365Z' => 'bra', 'BraA06t25366Z' => 'bra', 'BraA06t25367Z' => 'bra', 'BraA06t25368Z' => 'bra', 'BraA06t25369Z' => 'bra', 'BraA06t25370Z' => 'bra', 'BraA06t25371Z' => 'bra', 'BraA06t25372Z' => 'bra', 'BraA06t25373Z' => 'bra', 'BraA06t27072Z' => 'bra', 'BraA06t27226Z' => 'bra', 'BraA07t30574Z' => 'bra', 'BraA07t31574Z' => 'bra', 'BraA08t32467Z' => 'bra', 'BraA08t32621Z' => 'bra', 'BraA08t32622Z' => 'bra', 'BraA08t32623Z' => 'bra', 'BraA08t34414Z' => 'bra', 'BraA08t34701Z' => 'bra', 'BraA09t38004Z' => 'bra', 'BraA09t39532Z' => 'bra', 'BraA09t41589Z' => 'bra', 'BraA10t43022Z' => 'bra', 'BraA10t43853Z' => 'bra', 'C02p31940' => 'bna', 'C02p50970' => 'bna', 'C02p53760' => 'bna', 'C03p76520' => 'bna', 'C03p76540' => 'bna', 'C04p47760' => 'bna', 'C04p47770' => 'bna', 'C04p47780' => 'bna', 'C04p47790' => 'bna', 'C04p47880' => 'bna', 'C04p47890' => 'bna', 'C04p47900' => 'bna', 'C04p47910' => 'bna', 'C04p47920' => 'bna', 'C04p47930' => 'bna', 'C04p47940' => 'bna', 'C04p47950' => 'bna', 'C04p47960' => 'bna', 'C04p47970' => 'bna', 'C04p47980' => 'bna', 'C04p47990' => 'bna', 'C04p48000' => 'bna', 'C04p48020' => 'bna', 'C04p54770' => 'bna', 'C04p54780' => 'bna', 'C04p54790' => 'bna', 'C04p54800' => 'bna', 'C04p54810' => 'bna', 'C04p54820' => 'bna', 'C04p54830' => 'bna', 'C04p54840' => 'bna', 'C04p54850' => 'bna', 'C04p54860' => 'bna', 'C04p54870' => 'bna', 'C04p54880' => 'bna', 'C04p54890' => 'bna', 'C04p54900' => 'bna', 'C04p54910' => 'bna', 'C04p54920' => 'bna', 'C04p54930' => 'bna', 'C05p12110' => 'bna', 'C06p33250' => 'bna', 'C06p48670' => 'bna', 'C07p02670' => 'bna', 'C07p33550' => 'bna', 'C07p36180' => 'bna', 'C08p22670' => 'bna', 'C08p45800' => 'bna', 'C09p30910' => 'bna', 'C09p53210' => 'bna', 'CAN.G1024.2' => 'can', 'CAN.G1024.3' => 'can', 'CAN.G1024.4' => 'can', 'CAN.G1305.10' => 'can', 'CAN.G2055.1' => 'can', 'CAN.G58.11' => 'can', 'CAN.G58.14' => 'can', 'CAN.G58.16' => 'can', 'CAN.G58.3' => 'can', 'CAN.G58.7' => 'can', 'CAN.G58.8' => 'can', 'CAN.G58.9' => 'can', 'CAN.G631.18' => 'can', 'CAN.G66.10' => 'can', 'CAN.G67.9' => 'can', 'CANSAT21G0635' => 'cansat', 'CANSAT54G2595' => 'cansat', 'CANSAT64G1830' => 'cansat', 'CANSAT64G2919' => 'cansat', 'CARHR014760' => 'chi', 'CARHR025010' => 'chi', 'CARHR067790' => 'chi', 'CARHR145300' => 'chi', 'CARHR148350' => 'chi', 'CARHR220240' => 'chi', 'CARHR220250' => 'chi', 'CARHR220260' => 'chi', 'CARHR274230' => 'chi', 'Carub.0001s1401' => 'cru', 'Carub.0001s2405' => 'cru', 'Carub.0002s2131' => 'cru', 'Carub.0005s0176' => 'cru', 'Carub.0005s0538' => 'cru', 'Carub.0007s3459' => 'cru', 'Carub.0007s3480' => 'cru', 'Carub.0008s2125' => 'cru', 'Ca_01419_v3' => 'car', 'Ca_04431_v3' => 'car', 'Ca_20029_v3' => 'car', 'Ca_20030_v3' => 'car', 'Ca_21415_v3' => 'car', 'Ca_21834_v3' => 'car', 'Ca_21836_v3' => 'car', 'Ca_22574_v3' => 'car', 'Ca_24228_v3' => 'car', 'Ca_26398_v3' => 'car', 'Ca_27501_v3' => 'car', 'Cc00_g32300' => 'ccan', 'Cc01_g11230' => 'ccan', 'Cc04_g17100' => 'ccan', 'Cc04_g17120' => 'ccan', 'Cc04_g17140' => 'ccan', 'Cc07_g00750' => 'ccan', 'Cc11_g13250' => 'ccan', 'CDE02G0913' => 'cde', 'CDE02G4151' => 'cde', 'CDE05G0227' => 'cde', 'CDE05G0503' => 'cde', 'CDE05G3278' => 'cde', 'CDE07G1067' => 'cde', 'CDE08G0074' => 'cde', 'Cfa007236' => 'cfa', 'Cfa009002' => 'cfa', 'Cfa009709' => 'cfa', 'Cfa011329' => 'cfa', 'Cfa016074' => 'cfa', 'Cfa018967' => 'cfa', 'Ciclev10015288m.g' => 'ccl', 'Ciclev10023625m.g' => 'ccl', 'Ciclev10028626m.g' => 'ccl', 'Ciclev10031487m.g' => 'ccl', 'Ciclev10031493m.g' => 'ccl', 'CiPaw.03G054600' => 'cil', 'CiPaw.05G137500' => 'cil', 'CiPaw.05G212900' => 'cil', 'CiPaw.06G083000' => 'cil', 'CiPaw.11G041900' => 'cil', 'CiPaw.12G014400' => 'cil', 'CiPaw.13G112300' => 'cil', 'CiPaw.14G080000' => 'cil', 'ClCG02G021110' => 'cla', 'ClCG03G002210' => 'cla', 'ClCG04G012430' => 'cla', 'ClCG05G013430' => 'cla', 'ClCG05G024420' => 'cla', 'COL.COLO4_15140' => 'col', 'COL.COLO4_17192' => 'col', 'COL.COLO4_22980' => 'col', 'COL.COLO4_35508' => 'col', 'COL.COLO4_38448' => 'col', 'Cpa.g.sc171.25' => 'cpa', 'Cpa.g.sc183.34' => 'cpa', 'Cpa.g.sc43.130' => 'cpa', 'Cpa.g.sc898.1' => 'cpa', 'CsaV3_1G005280' => 'csa', 'CsaV3_1G012860' => 'csa', 'CsaV3_3G027130' => 'csa', 'CsaV3_5G032540' => 'csa', 'CsaV3_6G013860' => 'csa', 'CsaV3_6G013870' => 'csa', 'CSS0000033' => 'camsi', 'CSS0004208' => 'camsi', 'CSS0010118' => 'camsi', 'CSS0015521' => 'camsi', 'CSS0018816' => 'camsi', 'CSS0046340' => 'camsi', 'CSS0046758' => 'camsi', 'CSS0048423' => 'camsi', 'DCAR_007145' => 'dca', 'DCAR_015540' => 'dca', 'DCAR_018817' => 'dca', 'DCAR_021788' => 'dca', 'DCAR_027403' => 'dca', 'DCAR_031031' => 'dca', 'Dinv08175' => 'din', 'Dinv08450' => 'din', 'Dinv16628' => 'din', 'Dinv19936' => 'din', 'Dinv32757' => 'din', 'Dinv33346' => 'din', 'Dinv34171' => 'din', 'Dinv38686' => 'din', 'Duzib068G0975' => 'dzi', 'Duzib084G0456' => 'dzi', 'Duzib128G0468' => 'dzi', 'Duzib177G0150' => 'dzi', 'Duzib187G1525' => 'dzi', 'Duzib205G0115' => 'dzi', 'Duzib205G1273' => 'dzi', 'Duzib248G1147' => 'dzi', 'Duzib264G0902' => 'dzi', 'ECA232G4186' => 'eca', 'ECA234G1648' => 'eca', 'ECA238G0210' => 'eca', 'ECA246G0441' => 'eca', 'ECA246G2674' => 'eca', 'ECA248G2973' => 'eca', 'EL10Ac6g13178' => 'bvu', 'EL10Ac6g15369' => 'bvu', 'Eucgr.B00462' => 'egr', 'Eucgr.B02492' => 'egr', 'Eucgr.B03422' => 'egr', 'Eucgr.G02517' => 'egr', 'Eucgr.J02333' => 'egr', 'FAN04G3203' => 'fan', 'FAN05G2074' => 'fan', 'FAN07G1028' => 'fan', 'FAN08G0224' => 'fan', 'FAN09G4180' => 'fan', 'FAN11G0696' => 'fan', 'FAN12G2430' => 'fan', 'FAN13G2953' => 'fan', 'FAN14G1388' => 'fan', 'FAN16G0270' => 'fan', 'FAN17G0787' => 'fan', 'FAN18G0994' => 'fan', 'FAN21G1436' => 'fan', 'FAN22G1623' => 'fan', 'FAN25G1149' => 'fan', 'FvH4_3g32533' => 'fve', 'FvH4_4g31561' => 'fve', 'FvH4_5g15231' => 'fve', 'FvH4_6g53292' => 'fve', 'Glyma.01G045100' => 'gma', 'Glyma.02G105600' => 'gma', 'Glyma.04G172300' => 'gma', 'Glyma.05G028200' => 'gma', 'Glyma.05G077700' => 'gma', 'Glyma.06G191900' => 'gma', 'Glyma.08G298900' => 'gma', 'Glyma.11G147400' => 'gma', 'Glyma.12G068300' => 'gma', 'Glyma.12G173500' => 'gma', 'Glyma.13G326800' => 'gma', 'Glyma.16G057300' => 'gma', 'Glyma.17G098500' => 'gma', 'Glyma.18G122000' => 'gma', 'Glyma.19G090600' => 'gma', 'Gohir.A01G079250' => 'ghi', 'Gohir.A02G126600' => 'ghi', 'Gohir.A05G305200' => 'ghi', 'Gohir.A05G339000' => 'ghi', 'Gohir.A07G070800' => 'ghi', 'Gohir.A07G227700' => 'ghi', 'Gohir.A08G221648' => 'ghi', 'Gohir.A12G176032' => 'ghi', 'Gohir.A13G073100' => 'ghi', 'Gohir.D01G160400' => 'ghi', 'Gohir.D02G095351' => 'ghi', 'Gohir.D02G151100' => 'ghi', 'Gohir.D03G054600' => 'ghi', 'Gohir.D03G074000' => 'ghi', 'Gohir.D03G081700' => 'ghi', 'Gohir.D04G077532' => 'ghi', 'Gohir.D04G081200' => 'ghi', 'Gohir.D05G221950' => 'ghi', 'Gohir.D05G304500' => 'ghi', 'Gohir.D07G075300' => 'ghi', 'Gohir.D07G172400' => 'ghi', 'Gohir.D07G190450' => 'ghi', 'Gohir.D07G234800' => 'ghi', 'Gohir.D08G240600' => 'ghi', 'Gohir.D10G063400' => 'ghi', 'Gohir.D11G208666' => 'ghi', 'Gohir.D12G179040' => 'ghi', 'Gohir.D13G073200' => 'ghi', 'Gohir.D13G092400' => 'ghi', 'Gohir.D13G093700' => 'ghi', 'Gorai.001G270600' => 'gra', 'Gorai.003G057500' => 'gra', 'Gorai.004G255900' => 'gra', 'Gorai.007G223800' => 'gra', 'Gorai.008G004300' => 'gra', 'Gorai.009G324100' => 'gra', 'Gorai.010G139400' => 'gra', 'Gorai.012G087300' => 'gra', 'Gorai.013G083900' => 'gra', 'GSVIVG01008033001' => 'vvi', 'GSVIVG01020023001' => 'vvi', 'GSVIVG01024329001' => 'vvi', 'GSVIVG01025174001' => 'vvi', 'HanXRQChr01g0018401' => 'han', 'HanXRQChr02g0052061' => 'han', 'HanXRQChr04g0104411' => 'han', 'HanXRQChr04g0104421' => 'han', 'HanXRQChr04g0104431' => 'han', 'HanXRQChr04g0104451' => 'han', 'HanXRQChr04g0104461' => 'han', 'HanXRQChr04g0104471' => 'han', 'HanXRQChr04g0104481' => 'han', 'HanXRQChr04g0106541' => 'han', 'HanXRQChr04g0106551' => 'han', 'HanXRQChr04g0106561' => 'han', 'HanXRQChr04g0106571' => 'han', 'HanXRQChr04g0106581' => 'han', 'HanXRQChr04g0106591' => 'han', 'HanXRQChr04g0106601' => 'han', 'HanXRQChr04g0106611' => 'han', 'HanXRQChr04g0115081' => 'han', 'HanXRQChr04g0115091' => 'han', 'HanXRQChr05g0152301' => 'han', 'HanXRQChr05g0162591' => 'han', 'HanXRQChr08g0234521' => 'han', 'HanXRQChr09g0260491' => 'han', 'HanXRQChr09g0260501' => 'han', 'HanXRQChr09g0260711' => 'han', 'HanXRQChr09g0260721' => 'han', 'HanXRQChr09g0270761' => 'han', 'HanXRQChr11g0324511' => 'han', 'HanXRQChr12g0372581' => 'han', 'HanXRQChr12g0382921' => 'han', 'HanXRQChr14g0431011' => 'han', 'HanXRQChr14g0450711' => 'han', 'HanXRQChr14g0452941' => 'han', 'HanXRQChr16g0502841' => 'han', 'Haze_00372' => 'cav', 'Haze_07349' => 'cav', 'Haze_14864' => 'cav', 'Haze_23861' => 'cav', 'Hma1.2p1_0265F.1_g106650' => 'hma', 'Hma1.2p1_0434F.1_g152120' => 'hma', 'Hma1.2p1_0598F.1_g186740' => 'hma', 'Hma1.2p1_0735F.1_g210400' => 'hma', 'Hma1.2p1_1031F.1_g249960' => 'hma', 'Hma1.2p1_1067F.1_g253830' => 'hma', 'Hma1.2p1_1278F.1_g272350' => 'hma', 'Hma1.2p1_1449F.1_g284090' => 'hma', 'HPP92_002344' => 'vpl', 'HPP92_004323' => 'vpl', 'HPP92_009430' => 'vpl', 'HPP92_009450' => 'vpl', 'HPP92_011240' => 'vpl', 'HPP92_016458' => 'vpl', 'HPP92_016664' => 'vpl', 'Hund12727' => 'sun', 'Lalb_Chr02g0157711' => 'lal', 'Lalb_Chr04g0256181' => 'lal', 'Lalb_Chr08g0235811' => 'lal', 'Lalb_Chr11g0071591' => 'lal', 'Lalb_Chr14g0374711' => 'lal', 'Lalb_Chr21g0317471' => 'lal', 'Lalb_Chr22g0360431' => 'lal', 'Lalb_Chr24g0394581' => 'lal', 'Lj1g0004827' => 'lja', 'Lj1g0013715' => 'lja', 'Lj1P190T56' => 'lonja', 'Lj2g0018294' => 'lja', 'Lj3g0015155' => 'lja', 'Lj3P1039T74' => 'lonja', 'Lj6P791T12' => 'lonja', 'Lj9P461T32' => 'lonja', 'Lju41C52T7' => 'lonja', 'Lsat_1_v5_gn_1_65421' => 'lsa', 'Lsat_1_v5_gn_2_98280' => 'lsa', 'Lsat_1_v5_gn_3_52821' => 'lsa', 'Lsat_1_v5_gn_3_52881' => 'lsa', 'Lsat_1_v5_gn_4_10141' => 'lsa', 'Lsat_1_v5_gn_4_107720' => 'lsa', 'Lsat_1_v5_gn_7_49881' => 'lsa', 'Lsat_1_v5_gn_8_51861' => 'lsa', 'Manes.01G187600' => 'mes', 'Manes.04G022000' => 'mes', 'Manes.05G099500' => 'mes', 'Manes.08G161000' => 'mes', 'Manes.09G129600' => 'mes', 'Manes.11G144300' => 'mes', 'Manes.14G076400' => 'mes', 'Manes.15G160000' => 'mes', 'Manes.17G103600' => 'mes', 'Mapoly0011s0018' => 'mpo', 'Mapoly0016s0201' => 'mpo', 'Mapoly0040s0079' => 'mpo', 'Mapoly0086s0043' => 'mpo', 'Mapoly3498s0001' => 'mpo', 'MBI02_g18803_MAGBIO' => 'mbi', 'MBI02_g29597_MAGBIO' => 'mbi', 'MBI02_g38734_MAGBIO' => 'mbi', 'MBI02_g38735_MAGBIO' => 'mbi', 'MBI02_g41887_MAGBIO' => 'mbi', 'MBI02_g41888_MAGBIO' => 'mbi', 'MBI02_g46883_MAGBIO' => 'mbi', 'MBI02_g46884_MAGBIO' => 'mbi', 'MBI02_g46886_MAGBIO' => 'mbi', 'MBI05_g00385_MAGBIO' => 'mbi', 'MBI10_g04879_MAGBIO' => 'mbi', 'MBI11_g07457_MAGBIO' => 'mbi', 'MD03G1116300' => 'mdo', 'MD09G1011800' => 'mdo', 'MD09G1011900' => 'mdo', 'MD11G1134500' => 'mdo', 'MD13G1074100' => 'mdo', 'MD14G1197300' => 'mdo', 'MD16G1075300' => 'mdo', 'MD17G1012500' => 'mdo', 'Medtr0105s0020' => 'mtr', 'Medtr0105s0040' => 'mtr', 'Medtr0105s0060' => 'mtr', 'Medtr0105s0130' => 'mtr', 'Medtr0105s0170' => 'mtr', 'Medtr0345s0010' => 'mtr', 'Medtr0496s0010' => 'mtr', 'Medtr1330s0010' => 'mtr', 'Medtr1g043110' => 'mtr', 'Medtr2g094093' => 'mtr', 'Medtr4g022260' => 'mtr', 'Medtr4g022400' => 'mtr', 'Medtr4g108280' => 'mtr', 'Medtr5g039390' => 'mtr', 'Medtr6g023805' => 'mtr', 'Medtr7g029290' => 'mtr', 'Medtr8g468030' => 'mtr', 'MELO3C001967.2' => 'cme', 'MELO3C005056.2' => 'cme', 'MELO3C014876.2' => 'cme', 'MELO3C025768.2' => 'cme', 'MELO3C027345.2' => 'cme', 'Migut.D02215' => 'egut', 'Migut.E00106' => 'egut', 'Migut.K01460' => 'egut', 'Migut.L01313' => 'egut', 'MSTRG.12320' => 'ama', 'MSTRG.13411' => 'ama', 'MSTRG.17811' => 'ama', 'MSTRG.2352' => 'ama', 'MSTRG.688' => 'ama', 'MSTRG.7813' => 'ama', 'Nitab4.5_0000343g0010' => 'nta', 'Nitab4.5_0000343g0020' => 'nta', 'Nitab4.5_0000343g0030' => 'nta', 'Nitab4.5_0000417g0040' => 'nta', 'Nitab4.5_0000650g0120' => 'nta', 'Nitab4.5_0000762g0090' => 'nta', 'Nitab4.5_0000785g0030' => 'nta', 'Nitab4.5_0001488g0050' => 'nta', 'Nitab4.5_0001488g0060' => 'nta', 'Nitab4.5_0001488g0070' => 'nta', 'Nitab4.5_0001488g0090' => 'nta', 'Nitab4.5_0002151g0020' => 'nta', 'Nitab4.5_0003701g0040' => 'nta', 'Nitab4.5_0003971g0020' => 'nta', 'Nitab4.5_0004436g0040' => 'nta', 'Nitab4.5_0007549g0020' => 'nta', 'Nitab4.5_0010552g0020' => 'nta', 'Nn1g03716' => 'nnu', 'Nn2g10766' => 'nnu', 'Nn2g13080' => 'nnu', 'Nn3g16496' => 'nnu', 'Nn3g17183' => 'nnu', 'Nn4g22348' => 'nnu', 'Nn4g23102' => 'nnu', 'Nn6g35577' => 'nnu', 'Nn7g37074' => 'nnu', 'Nn7g37729' => 'nnu', 'Oeu001577.1' => 'oeu', 'Oeu002856.1' => 'oeu', 'Oeu002859.1' => 'oeu', 'Oeu013626.1' => 'oeu', 'Oeu013627.1' => 'oeu', 'Oeu013943.1' => 'oeu', 'Oeu013945.1' => 'oeu', 'Oeu020866.1' => 'oeu', 'Oeu022202.1' => 'oeu', 'Oeu028299.1' => 'oeu', 'Oeu035219.1' => 'oeu', 'Oeu045410.1' => 'oeu', 'Oeu054899.1' => 'oeu', 'Oeu054903.1' => 'oeu', 'Oeu058779.1' => 'oeu', 'Oeu059094.1' => 'oeu', 'Os02g0748300' => 'osa', 'Os03g0171600' => 'osa', 'Os04g0619300' => 'osa', 'Os11g0602800' => 'osa', 'Peaxi162Scf00009g00025' => 'pax', 'Peaxi162Scf00101g00212' => 'pax', 'Peaxi162Scf00324g00081' => 'pax', 'Peaxi162Scf00541g00068' => 'pax', 'PGR083G1362' => 'pgr', 'PGR083G1444' => 'pgr', 'PGR102G1688' => 'pgr', 'PGR102G1749' => 'pgr', 'PGR119G1726' => 'pgr', 'PGSC0003DMG400002826' => 'stu', 'PGSC0003DMG400002840' => 'stu', 'PGSC0003DMG400008107' => 'stu', 'PGSC0003DMG400008524' => 'stu', 'PGSC0003DMG400018088' => 'stu', 'PGSC0003DMG400023050' => 'stu', 'PGSC0003DMG400041356' => 'stu', 'Phvul.001G094400' => 'pvu', 'Phvul.002G088200' => 'pvu', 'Phvul.003G067300' => 'pvu', 'Phvul.003G191300' => 'pvu', 'Phvul.005G135911' => 'pvu', 'Phvul.009G189100' => 'pvu', 'Phvul.011G078400' => 'pvu', 'Potri.001G331500' => 'ptr', 'Potri.013G077800' => 'ptr', 'Potri.015G063200' => 'ptr', 'Potri.017G069500' => 'ptr', 'Potri.019G042100' => 'ptr', 'Pp3c11_19970' => 'ppa', 'Pp3c18_4130' => 'ppa', 'Pp3c7_3040' => 'ppa', 'Prupe.1G271900' => 'ppe', 'Prupe.2G156000' => 'ppe', 'Prupe.3G305200' => 'ppe', 'Prupe.5G189400' => 'ppe', 'Prupe.6G100400' => 'ppe', 'Psat0s1149g0040' => 'psa', 'Psat0s1149g0080' => 'psa', 'Psat0s1149g0160' => 'psa', 'Psat0s1248g0080' => 'psa', 'Psat0s1248g0120' => 'psa', 'Psat0s1248g0240' => 'psa', 'Psat0s4327g0080' => 'psa', 'Psat1g087960' => 'psa', 'Psat2g121720' => 'psa', 'Psat3g169800' => 'psa', 'Psat4g138280' => 'psa', 'Psat5g278160' => 'psa', 'Psat7g127600' => 'psa', 'Psat7g127680' => 'psa', 'Psat7g232040' => 'psa', 'Psat7g232080' => 'psa', 'Psat7g232160' => 'psa', 'Psat7g232240' => 'psa', 'PSO017G4653' => 'pso', 'PSO063G2374' => 'pso', 'PSO339G3210' => 'pso', 'PSO384G2879' => 'pso', 'PSO782G4879' => 'pso', 'PSO832G4455' => 'pso', 'QL01p022379' => 'qlo', 'QL02p071606' => 'qlo', 'QL03p064773' => 'qlo', 'QL03p064792' => 'qlo', 'QL09p020775' => 'qlo', 'QL10p016232' => 'qlo', 'RcHm_v2.0_Chr1g0373971' => 'rch', 'RcHm_v2.0_Chr1g0373981' => 'rch', 'RcHm_v2.0_Chr2g0175451' => 'rch', 'RcHm_v2.0_Chr4g0440091' => 'rch', 'RcHm_v2.0_Chr5g0059621' => 'rch', 'RcHm_v2.0_Chr7g0180901' => 'rch', 'Rhsim01G0217600' => 'rsi', 'Rhsim08G0157400' => 'rsi', 'Rhsim10G0007000' => 'rsi', 'Rhsim10G0007100' => 'rsi', 'Rhsim12G0061500' => 'rsi', 'Rhsim12G0131900' => 'rsi', 'Rhsim12G0157600' => 'rsi', 'RhsimUnG0099300' => 'rsi', 'Sabra13G0066700' => 'sbr', 'Sabra15G0088400' => 'sbr', 'Sabra16G0212500' => 'sbr', 'Sabra19G0052400' => 'sbr', 'Sc03g0006590' => 'sci', 'Sc07g0003990' => 'sci', 'Sc11g0001790' => 'sci', 'Sc12g0006260' => 'sci', 'Sc14g0008290' => 'sci', 'Sed0006682' => 'sed', 'Sed0008666' => 'sed', 'Sed0014634' => 'sed', 'Sed0015442' => 'sed', 'Sed0016326' => 'sed', 'Sed0020829' => 'sed', 'Sed0026642' => 'sed', 'SEGI_00258' => 'sgi', 'SEGI_02254' => 'sgi', 'SEGI_03281' => 'sgi', 'SEGI_04068' => 'sgi', 'SEGI_16034' => 'sgi', 'SEGI_19831' => 'sgi', 'SEGI_25127' => 'sgi', 'SEGI_32633' => 'sgi', 'SEGI_41585' => 'sgi', 'SGA_v2.0_scaffold302G47831' => 'sas', 'SGA_v2.0_scaffold47G17592' => 'sas', 'SGA_v2.0_scaffold87G26944' => 'sas', 'SGA_v2.0_scaffold97G29218' => 'sas', 'SHI16244' => 'shi', 'SHI25210' => 'shi', 'SHI25214' => 'shi', 'SHI26952' => 'shi', 'SHI29913' => 'shi', 'SHI29914' => 'shi', 'SHI39420' => 'shi', 'SHI42405' => 'shi', 'SMO167G0046' => 'smo', 'SMO198G0111' => 'smo', 'SMO301G0026' => 'smo', 'SMO358G0146' => 'smo', 'Solyc02g021800.1' => 'sly', 'Solyc02g021810.1' => 'sly', 'Solyc03g113010.3' => 'sly', 'Solyc04g005670.3' => 'sly', 'Solyc04g005870.1' => 'sly', 'Solyc05g007220.4' => 'sly', 'Solyc05g016430.1' => 'sly', 'Solyc07g009410.4' => 'sly', 'Solyc11g069320.1' => 'sly', 'Sopen03g032080' => 'spe', 'Sopen04g001720' => 'spe', 'Sopen05g003180' => 'spe', 'Sopen07g005160' => 'spe', 'Sopen11g028040' => 'spe', 'Sp1g12680' => 'spa', 'Sp1g21850' => 'spa', 'Sp2g13950' => 'spa', 'Sp2g16260' => 'spa', 'Sp5g29690' => 'spa', 'Sp6g22140' => 'spa', 'Sp7g01030' => 'spa', 'Sp7g03660' => 'spa', 'Sp7g05820' => 'spa', 'Sp7g05830' => 'spa', 'TAR371G0779' => 'tar', 'TAR371G1069' => 'tar', 'TAR374G1663' => 'tar', 'TAR375G0886' => 'tar', 'TAR622G1142' => 'tar', 'TAR622G1387' => 'tar', 'TAR623G0148' => 'tar', 'TAR629G1085' => 'tar', 'TAR629G2770' => 'tar', 'TAR629G3053' => 'tar', 'TAR633G0727' => 'tar', 'TAR636G3172' => 'tar', 'THA.LOC104805150' => 'tha', 'THA.LOC104810851' => 'tha', 'THA.LOC104814829' => 'tha', 'THA.LOC104822109' => 'tha', 'THA.LOC104824077' => 'tha', 'THA.LOC104825620' => 'tha', 'Thecc.02G349300' => 'tca', 'Thecc.03G083100' => 'tca', 'Thecc.04G034800' => 'tca', 'Thecc.05G222400' => 'tca', 'Thhalv10004163m.g' => 'esa', 'Thhalv10004304m.g' => 'esa', 'Thhalv10005262m.g' => 'esa', 'Thhalv10007668m.g' => 'esa', 'Thhalv10016074m.g' => 'esa', 'Thhalv10018558m.g' => 'esa', 'Thhalv10028195m.g' => 'esa', 'TPR.G11504' => 'tpr', 'TPR.G12132' => 'tpr', 'TPR.G12152' => 'tpr', 'TPR.G22813' => 'tpr', 'TPR.G28881' => 'tpr', 'TPR.G33245' => 'tpr', 'TPR.G34730' => 'tpr', 'TPR.G38279' => 'tpr', 'TPR.G39835' => 'tpr', 'TPR.G5567' => 'tpr', 'TPR.G5620' => 'tpr', 'TPR.G9255' => 'tpr', 'TWI15G0449' => 'twi', 'TWI18G1351' => 'twi', 'TWI31G0749' => 'twi', 'TWI56G1030' => 'twi', 'TWI75G0137' => 'twi', 'TWI75G1665' => 'twi', 'TWI79G1718' => 'twi', 'TWI81G0350' => 'twi', 'TWI81G0877' => 'twi', 'unitig_0.g1515' => 'ugi', 'unitig_26.g10307' => 'ugi', 'unitig_52.g17171' => 'ugi', 'unitig_62.g23686' => 'ugi', 'unitig_699.g19500' => 'ugi', 'unitig_699.g19917' => 'ugi', 'unitig_747.g21175' => 'ugi', 'unitig_749.g13233' => 'ugi', 'vmacro00120' => 'vma', 'vmacro00121' => 'vma', 'vmacro05951' => 'vma', 'vmacro16341' => 'vma', 'vmacro16558' => 'vma', 'VMungo0251G1746' => 'vmu', 'VMungo1080G0733' => 'vmu', 'VMungo1127G1111' => 'vmu', 'VMungo1215G2204' => 'vmu', 'VMungo1215G2779' => 'vmu', 'VMungo1309G0186' => 'vmu', 'VMungo1383G2367' => 'vmu', 'Zm00001eb005530' => 'zma', 'Zm00001eb048480' => 'zma', 'Zm00001eb070480' => 'zma', 'Zm00001eb114540' => 'zma', 'Zm00001eb114550' => 'zma', 'Zm00001eb114990' => 'zma', 'Zm00001eb167290' => 'zma', 'Zm00001eb182100' => 'zma', 'Zm00001eb194450' => 'zma', 'Zm00001eb223320' => 'zma', 'Zm00001eb308270' => 'zma', 'Zm00001eb346220' => 'zma', 'Zm00001eb402180' => 'zma', 'Zm00001eb431120' => 'zma' ) $gf_id = 'HOM05D000614' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000614' ) $data_identifier = 'HOM05D000614' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 89, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 9, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 57, 'bol' => (int) 33, 'bra' => (int) 45, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 11, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 15, 'ghi' => (int) 30, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 34, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 8, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 5, 'mbi' => (int) 12, 'mdo' => (int) 8, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 10, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431120' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1